Package: hapassoc 1.2-9

hapassoc: Inference of Trait Associations with SNP Haplotypes and Other Attributes using the EM Algorithm

The following R functions are used for inference of trait associations with haplotypes and other covariates in generalized linear models. The functions are developed primarily for data collected in cohort or cross-sectional studies. They can accommodate uncertain haplotype phase and handle missing genotypes at some SNPs.

Authors:K. Burkett <[email protected]>, B. McNeney <[email protected]>, J. Graham <[email protected]>, with code for case-control data contributed by Zhijian Chen <[email protected]>

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hapassoc/json (API)

# Install 'hapassoc' in R:
install.packages('hapassoc', repos = c('https://kmburkett.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/sfustatgen/research/issues

Datasets:
  • hypoDat - Simulated data for a hypothetical binary trait
  • hypoDatGeno - Simulated data for a hypothetical genetic SNPs

On CRAN:

2.98 score 16 scripts 427 downloads 6 mentions 2 exports 0 dependencies

Last updated 3 years agofrom:e844507d05. Checks:OK: 9. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 31 2024
R-4.5-win-x86_64OKOct 31 2024
R-4.5-linux-x86_64OKOct 31 2024
R-4.4-win-x86_64OKOct 31 2024
R-4.4-mac-x86_64OKOct 31 2024
R-4.4-mac-aarch64OKOct 31 2024
R-4.3-win-x86_64OKOct 31 2024
R-4.3-mac-x86_64OKOct 31 2024
R-4.3-mac-aarch64OKOct 31 2024

Exports:hapassocpre.hapassoc

Dependencies:

hapassoc

Rendered fromhapassoc.Rnwusingutils::Sweaveon Oct 31 2024.

Last update: 2014-08-25
Started: 2014-08-25